The pbcore package provides Python APIs for interacting with PacBio data files and writing...
Stampy is a package for the mapping of short reads from illumina sequencing machines onto a...
Bridger is an efficient de novo transcriptome assembler for RNA-Seq data. It expects as input...
The ALDER software computes the weighted linkage disequilibrium (LD) statistic for making inference...
ShortStack is a tool developed to process and analyze smallRNA-seq data with respect to a...
Welcome to the GenoToul bioinformatics facility
The GenoToul bioinformatics facility is part of the Genotoul GIS. It has been set up in 2000. Since 2009, it is one of the 13 IBISA bioinformatics platforms. Since 2008, the plateform is involved in a collaboration with the genomic platform to process huge volumes of data produced by the new generations of sequencers and make those data available to biologists (ng6).
The available equipment includes :
- A computer farm :
- about 5000 cores (INTEL-2014, AMD-2012)
- 34 Tera Byte memory (3TB on a SMP machine)
- Infiniband interconnection (QDR)
- parallel file system (GPFS)
- Capacities for servers hosting and web services
- More than 1Peta Byte disk space
To create an user account use this link.
Available services :
- access to public biological banks
- access to generic and specific bioinformatics software pieces
- access to web resources
- projects (Web/VM) hosting facilities (ask for a project hosting)
- training sessions
Support about technical issues :
All questions about technical issues can be mailed to support.genopole(at)toulouse.inra.fr.
Support about biological and bioinformatics projects :
The platform can help you to process your data or to develop specific databases or software. For any specific request please send a mail to anim.bioinfo(at)toulouse.inra.fr.